Detailed information of SNP:
|
SNP ID:
sf0218844829(Gbrowse)
Chromosome: chr02 Position: 18844829 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 57.47% | 42.53% |
| All Indica | 772 | 29.02% | 70.98% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 359 | 32.03% | 67.97% |
| Indica II | 212 | 36.32% | 63.68% |
| Indica Intermediate | 201 | 15.92% | 84.08% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218844829 | G->A | LOC_Os02g31910(LOC_Os02g31910.1) | INTRON |