Detailed information of SNP:
|
SNP ID:
sf0218846736(Gbrowse)
Chromosome: chr02 Position: 18846736 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 50.57% | 49.43% |
| All Indica | 793 | 20.68% | 79.32% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 372 | 22.04% | 77.96% |
| Indica II | 211 | 32.23% | 67.77% |
| Indica Intermediate | 210 | 6.67% | 93.33% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218846736 | A->G | INTERGENIC | None |