Detailed information of SNP:
|
SNP ID:
sf0218850581(Gbrowse)
Chromosome: chr02 Position: 18850581 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 53.00% | 47.00% |
| All Indica | 797 | 23.84% | 76.16% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 374 | 25.13% | 74.87% |
| Indica II | 212 | 33.96% | 66.04% |
| Indica Intermediate | 211 | 11.37% | 88.63% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218850581 | T->C | INTERGENIC | None |