Detailed information of SNP:
|
SNP ID:
sf0218851878(Gbrowse)
Chromosome: chr02 Position: 18851878 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 90.29% | 9.71% |
| All Indica | 782 | 83.50% | 16.50% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 368 | 92.12% | 7.88% |
| Indica II | 209 | 68.42% | 31.58% |
| Indica Intermediate | 205 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218851878 | G->A | INTERGENIC | None |