Detailed information of SNP:
|
SNP ID:
sf0218852523(Gbrowse)
Chromosome: chr02 Position: 18852523 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.05% | 44.95% |
| All Indica | 798 | 26.07% | 73.93% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 30.21% | 69.79% |
| Indica II | 213 | 32.86% | 67.14% |
| Indica Intermediate | 211 | 11.85% | 88.15% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218852523 | A->G | INTERGENIC | None |