Detailed information of SNP:
|
SNP ID:
sf0218860222(Gbrowse)
Chromosome: chr02 Position: 18860222 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.63% | 41.37% |
| All Indica | 799 | 29.79% | 70.21% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 33.60% | 66.40% |
| Indica II | 213 | 33.80% | 66.20% |
| Indica Intermediate | 211 | 18.96% | 81.04% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218860222 | C->A | INTERGENIC | None |