Detailed information of SNP:
|
SNP ID:
sf0218908016(Gbrowse)
Chromosome: chr02 Position: 18908016 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 51.94% | 48.06% |
| All Indica | 797 | 19.07% | 80.93% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 30.48% | 69.52% |
| Indica II | 213 | 7.51% | 92.49% |
| Indica Intermediate | 210 | 10.48% | 89.52% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218908016 | C->T | INTERGENIC | None |