Detailed information of SNP:
|
SNP ID:
sf0218942478(Gbrowse)
Chromosome: chr02 Position: 18942478 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 70.52% | 29.48% |
| All Indica | 798 | 81.20% | 18.80% |
| All Japonica | 490 | 59.59% | 40.41% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 67.47% | 32.53% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 329 | 48.02% | 51.98% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 64.18% | 35.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218942478 | T->C | INTERGENIC | None |