Detailed information of SNP:
|
SNP ID:
sf0218943281(Gbrowse)
Chromosome: chr02 Position: 18943281 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 54.26% | 45.74% |
| All Indica | 792 | 22.73% | 77.27% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 374 | 36.10% | 63.90% |
| Indica II | 209 | 8.13% | 91.87% |
| Indica Intermediate | 209 | 13.40% | 86.60% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0218943281 | G->A | INTERGENIC | None |