Detailed information of SNP:
|
SNP ID:
sf0219038205(Gbrowse)
Chromosome: chr02 Position: 19038205 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 53.53% | 46.47% |
| All Indica | 798 | 23.31% | 76.69% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 38.24% | 61.76% |
| Indica II | 213 | 6.57% | 93.43% |
| Indica Intermediate | 211 | 13.74% | 86.26% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219038205 | T->C | INTERGENIC | None |