Detailed information of SNP:
|
SNP ID:
sf0219055363(Gbrowse)
Chromosome: chr02 Position: 19055363 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1263 | 91.92% | 8.08% |
| All Indica | 761 | 92.12% | 7.88% |
| All Japonica | 397 | 100.00% | 0.00% |
| Aus | 54 | 33.33% | 66.67% |
| Indica I | 344 | 84.59% | 15.41% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 206 | 98.54% | 1.46% |
| Temperate Japonica | 255 | 100.00% | 0.00% |
| Tropical Japonica | 82 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219055363 | G->A | LOC_Os02g32280(LOC_Os02g32280.1) | Non-Synonymous SNP |