Detailed information of SNP:
|
SNP ID:
sf0219193301(Gbrowse)
Chromosome: chr02 Position: 19193301 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 53.49% | 46.51% |
| All Indica | 799 | 71.84% | 28.16% |
| All Japonica | 495 | 32.32% | 67.68% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 56.53% | 43.47% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 42.69% | 57.31% |
| Tropical Japonica | 92 | 6.52% | 93.48% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219193301 | G->A | INTERGENIC | None |