Detailed information of SNP:
|
SNP ID:
sf0219201666(Gbrowse)
Chromosome: chr02 Position: 19201666 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 61.79% | 38.21% |
| All Indica | 797 | 35.76% | 64.24% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 49.06% | 50.94% |
| Indica II | 213 | 13.15% | 86.85% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219201666 | C->T | INTERGENIC | None |