Detailed information of SNP:
|
SNP ID:
sf0219286509(Gbrowse)
Chromosome: chr02 Position: 19286509 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 63.55% | 36.45% |
| All Indica | 793 | 40.10% | 59.90% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 47.45% | 52.55% |
| Indica II | 212 | 37.26% | 62.74% |
| Indica Intermediate | 208 | 29.81% | 70.19% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219286509 | C->T | INTERGENIC | None |