Detailed information of SNP:
|
SNP ID:
sf0219287168(Gbrowse)
Chromosome: chr02 Position: 19287168 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1308 | 97.71% | 2.29% |
| All Indica | 772 | 99.87% | 0.13% |
| All Japonica | 422 | 93.13% | 6.87% |
| Aus | 60 | 100.00% | 0.00% |
| Indica I | 354 | 99.72% | 0.28% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 281 | 90.39% | 9.61% |
| Tropical Japonica | 83 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 96.55% | 3.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219287168 | G->T | INTERGENIC | None |