Detailed information of SNP:
|
SNP ID:
sf0219342998(Gbrowse)
Chromosome: chr02 Position: 19342998 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 95.00% | 5.00% |
| All Indica | 787 | 95.30% | 4.70% |
| All Japonica | 491 | 98.98% | 1.02% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 367 | 91.28% | 8.72% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 330 | 99.39% | 0.61% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219342998 | C->T | INTERGENIC | None |