Detailed information of SNP:
|
SNP ID:
sf0219346155(Gbrowse)
Chromosome: chr02 Position: 19346155 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 88.81% | 11.19% |
| All Indica | 797 | 87.45% | 12.55% |
| All Japonica | 465 | 89.89% | 10.11% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 209 | 78.47% | 21.53% |
| Temperate Japonica | 333 | 94.29% | 5.71% |
| Tropical Japonica | 73 | 95.89% | 4.11% |
| Japonica Intermediate | 59 | 57.63% | 42.37% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219346155 | G->A | INTERGENIC | None |