Detailed information of SNP:
|
SNP ID:
sf0219371170(Gbrowse)
Chromosome: chr02 Position: 19371170 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1185 | 98.23% | 1.77% |
| All Indica | 728 | 100.00% | 0.00% |
| All Japonica | 364 | 94.78% | 5.22% |
| Aus | 46 | 100.00% | 0.00% |
| Indica I | 320 | 100.00% | 0.00% |
| Indica II | 205 | 100.00% | 0.00% |
| Indica Intermediate | 203 | 100.00% | 0.00% |
| Temperate Japonica | 232 | 93.53% | 6.47% |
| Tropical Japonica | 75 | 100.00% | 0.00% |
| Japonica Intermediate | 57 | 92.98% | 7.02% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 34 | 97.06% | 2.94% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219371170 | C->T | LOC_Os02g32670(LOC_Os02g32670.1) | Synonymous |