Detailed information of SNP:
|
SNP ID:
sf0219410841(Gbrowse)
Chromosome: chr02 Position: 19410841 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 94.94% | 5.06% |
| All Indica | 777 | 97.43% | 2.57% |
| All Japonica | 471 | 92.36% | 7.64% |
| Aus | 62 | 88.71% | 11.29% |
| Indica I | 362 | 95.58% | 4.42% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 203 | 99.01% | 0.99% |
| Temperate Japonica | 311 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 62.37% | 37.63% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219410841 | C->T | LOC_Os02g32690(LOC_Os02g32690.1) | INTRON |
| sf0219410841 | C->T | LOC_Os02g32690(LOC_Os02g32690.2) | INTRON |