Detailed information of SNP:
|
SNP ID:
sf0219412184(Gbrowse)
Chromosome: chr02 Position: 19412184 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 94.29% | 5.71% |
| All Indica | 747 | 90.50% | 9.50% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 96.72% | 3.28% |
| Indica II | 186 | 82.80% | 17.20% |
| Indica Intermediate | 195 | 86.15% | 13.85% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219412184 | G->T | LOC_Os02g32690(LOC_Os02g32690.1) | INTRON |
| sf0219412184 | G->T | LOC_Os02g32690(LOC_Os02g32690.2) | INTRON |