Detailed information of SNP:
|
SNP ID:
sf0219421936(Gbrowse)
Chromosome: chr02 Position: 19421936 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 61.56% | 38.44% |
| All Indica | 780 | 38.97% | 61.03% |
| All Japonica | 496 | 91.13% | 8.87% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 370 | 54.32% | 45.68% |
| Indica II | 203 | 22.17% | 77.83% |
| Indica Intermediate | 207 | 28.02% | 71.98% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219421936 | T->C | INTERGENIC | None |