Detailed information of SNP:
|
SNP ID:
sf0219441239(Gbrowse)
Chromosome: chr02 Position: 19441239 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.53% | 44.47% |
| All Indica | 799 | 32.92% | 67.08% |
| All Japonica | 497 | 86.12% | 13.88% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 49.87% | 50.13% |
| Indica II | 213 | 14.55% | 85.45% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219441239 | A->G | INTERGENIC | None |