Detailed information of SNP:
|
SNP ID:
sf0219494002(Gbrowse)
Chromosome: chr02 Position: 19494002 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 82.77% | 17.23% |
| All Indica | 795 | 77.48% | 22.52% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 65 | 38.46% | 61.54% |
| Indica I | 374 | 63.90% | 36.10% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 209 | 83.73% | 16.27% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219494002 | C->T | INTERGENIC | None |