Detailed information of SNP:
|
SNP ID:
sf0219561443(Gbrowse)
Chromosome: chr02 Position: 19561443 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1368 | 97.15% | 2.85% |
| All Indica | 788 | 95.05% | 4.95% |
| All Japonica | 458 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 366 | 90.44% | 9.56% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 313 | 100.00% | 0.00% |
| Tropical Japonica | 83 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219561443 | T->C | INTERGENIC | None |