Detailed information of SNP:
|
SNP ID:
sf0219637710(Gbrowse)
Chromosome: chr02 Position: 19637710 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 93.57% | 6.43% |
| All Indica | 751 | 88.55% | 11.45% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 84.30% | 15.70% |
| Indica II | 195 | 95.38% | 4.62% |
| Indica Intermediate | 193 | 89.64% | 10.36% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219637710 | C->T | INTERGENIC | None |