Detailed information of SNP:
|
SNP ID:
sf0219726312(Gbrowse)
Chromosome: chr02 Position: 19726312 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 50.76% | 49.24% |
| All Indica | 767 | 24.51% | 75.49% |
| All Japonica | 497 | 83.30% | 16.70% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 359 | 35.38% | 64.62% |
| Indica II | 203 | 16.75% | 83.25% |
| Indica Intermediate | 205 | 13.17% | 86.83% |
| Temperate Japonica | 335 | 77.01% | 22.99% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219726312 | A->G | INTERGENIC | None |