Detailed information of SNP:
|
SNP ID:
sf0219755938(Gbrowse)
Chromosome: chr02 Position: 19755938 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 67.19% | 32.81% |
| All Indica | 796 | 83.92% | 16.08% |
| All Japonica | 497 | 47.69% | 52.31% |
| Aus | 65 | 33.85% | 66.15% |
| Indica I | 373 | 73.99% | 26.01% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 68.06% | 31.94% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219755938 | A->G | INTERGENIC | None |