Detailed information of SNP:
|
SNP ID:
sf0219761855(Gbrowse)
Chromosome: chr02 Position: 19761855 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 80.06% | 19.94% |
| All Indica | 798 | 91.73% | 8.27% |
| All Japonica | 494 | 68.02% | 31.98% |
| Aus | 66 | 50.00% | 50.00% |
| Indica I | 374 | 84.76% | 15.24% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 333 | 70.87% | 29.13% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219761855 | G->A | LOC_Os02g33260(LOC_Os02g33260.1) | Synonymous |