Detailed information of SNP:
|
SNP ID:
sf0219763638(Gbrowse)
Chromosome: chr02 Position: 19763638 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 79.76% | 20.24% |
| All Indica | 798 | 91.60% | 8.40% |
| All Japonica | 497 | 68.21% | 31.79% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 84.76% | 15.24% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 70.15% | 29.85% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219763638 | C->T | LOC_Os02g33260(LOC_Os02g33260.1) | Synonymous |