Detailed information of SNP:
|
SNP ID:
sf0219763709(Gbrowse)
Chromosome: chr02 Position: 19763709 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 78.79% | 21.21% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 497 | 67.61% | 32.39% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 82.40% | 17.60% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 70.45% | 29.55% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219763709 | T->G | LOC_Os02g33260(LOC_Os02g33260.1) | INTRON |