Detailed information of SNP:
|
SNP ID:
sf0219765322(Gbrowse)
Chromosome: chr02 Position: 19765322 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 79.27% | 20.73% |
| All Indica | 798 | 90.60% | 9.40% |
| All Japonica | 497 | 69.01% | 30.99% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 374 | 82.89% | 17.11% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 71.94% | 28.06% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219765322 | C->T | INTERGENIC | None |