Detailed information of SNP:
|
SNP ID:
sf0219765512(Gbrowse)
Chromosome: chr02 Position: 19765512 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 80.81% | 19.19% |
| All Indica | 797 | 92.10% | 7.90% |
| All Japonica | 492 | 69.51% | 30.49% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 373 | 85.52% | 14.48% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 332 | 72.89% | 27.11% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 67 | 35.82% | 64.18% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219765512 | G->A | LOC_Os02g33270(LOC_Os02g33270.1) | Synonymous |