Detailed information of SNP:
|
SNP ID:
sf0219771742(Gbrowse)
Chromosome: chr02 Position: 19771742 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 78.65% | 21.35% |
| All Indica | 799 | 90.36% | 9.64% |
| All Japonica | 497 | 68.01% | 31.99% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 82.40% | 17.60% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 70.75% | 29.25% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219771742 | G->A | LOC_Os02g33280(LOC_Os02g33280.1) | Non-Synonymous SNP |