Detailed information of SNP:
|
SNP ID:
sf0219771865(Gbrowse)
Chromosome: chr02 Position: 19771865 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 79.83% | 20.17% |
| All Indica | 796 | 90.70% | 9.30% |
| All Japonica | 496 | 69.35% | 30.65% |
| Aus | 65 | 49.23% | 50.77% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 334 | 72.46% | 27.54% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219771865 | G->A | LOC_Os02g33280(LOC_Os02g33280.1) | Non-Synonymous SNP |