Detailed information of SNP:
|
SNP ID:
sf0219772057(Gbrowse)
Chromosome: chr02 Position: 19772057 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 80.03% | 19.97% |
| All Indica | 796 | 91.21% | 8.79% |
| All Japonica | 494 | 69.84% | 30.16% |
| Aus | 66 | 43.94% | 56.06% |
| Indica I | 372 | 83.60% | 16.40% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 72.75% | 27.25% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 66 | 37.88% | 62.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219772057 | G->A | LOC_Os02g33280(LOC_Os02g33280.1) | Non-Synonymous SNP |