Detailed information of SNP:
|
SNP ID:
sf0219780486(Gbrowse)
Chromosome: chr02 Position: 19780486 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 78.76% | 21.24% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 496 | 67.94% | 32.06% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 374 | 82.35% | 17.65% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 70.96% | 29.04% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219780486 | C->T | INTERGENIC | None |