Detailed information of SNP:
|
SNP ID:
sf0219795807(Gbrowse)
Chromosome: chr02 Position: 19795807 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 51.10% | 48.90% |
| All Indica | 797 | 15.56% | 84.44% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 375 | 23.20% | 76.80% |
| Indica II | 213 | 11.27% | 88.73% |
| Indica Intermediate | 209 | 6.22% | 93.78% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219795807 | G->A | LOC_Os02g33335(LOC_Os02g33335.1) | Non-Synonymous SNP |