Detailed information of SNP:
|
SNP ID:
sf0219811679(Gbrowse)
Chromosome: chr02 Position: 19811679 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 51.02% | 48.98% |
| All Indica | 799 | 15.89% | 84.11% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 23.73% | 76.27% |
| Indica II | 213 | 11.27% | 88.73% |
| Indica Intermediate | 211 | 6.64% | 93.36% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219811679 | A->G | INTERGENIC | None |