Detailed information of SNP:
|
SNP ID:
sf0219824991(Gbrowse)
Chromosome: chr02 Position: 19824991 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 75.62% | 24.38% |
| All Indica | 797 | 90.84% | 9.16% |
| All Japonica | 496 | 52.82% | 47.18% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 88.77% | 11.23% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 334 | 59.58% | 40.42% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219824991 | T->C | LOC_Os02g33370(LOC_Os02g33370.1) | Non-Synonymous SNP |