Detailed information of SNP:
|
SNP ID:
sf0219840504(Gbrowse)
Chromosome: chr02 Position: 19840504 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 88.40% | 11.60% |
| All Indica | 798 | 93.98% | 6.02% |
| All Japonica | 494 | 85.63% | 14.37% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 374 | 88.24% | 11.76% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 333 | 86.49% | 13.51% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219840504 | T->C | INTERGENIC | None |