Detailed information of SNP:
|
SNP ID:
sf0219871038(Gbrowse)
Chromosome: chr02 Position: 19871038 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 80.03% | 19.97% |
| All Indica | 797 | 93.85% | 6.15% |
| All Japonica | 492 | 59.55% | 40.45% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 65.87% | 34.13% |
| Tropical Japonica | 90 | 24.44% | 75.56% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219871038 | T->G | INTERGENIC | None |