Detailed information of SNP:
|
SNP ID:
sf0219872953(Gbrowse)
Chromosome: chr02 Position: 19872953 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 79.89% | 20.11% |
| All Indica | 798 | 93.73% | 6.27% |
| All Japonica | 492 | 59.35% | 40.65% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 65.57% | 34.43% |
| Tropical Japonica | 90 | 24.44% | 75.56% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219872953 | T->C | INTERGENIC | None |