Detailed information of SNP:
|
SNP ID:
sf0219885006(Gbrowse)
Chromosome: chr02 Position: 19885006 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 64.12% | 35.88% |
| All Indica | 799 | 92.49% | 7.51% |
| All Japonica | 495 | 20.61% | 79.39% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 21.56% | 78.44% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219885006 | A->G | INTERGENIC | None |