Detailed information of SNP:
|
SNP ID:
sf0219885808(Gbrowse)
Chromosome: chr02 Position: 19885808 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 91.75% | 8.25% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 497 | 81.29% | 18.71% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 81.19% | 18.81% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219885808 | G->A | INTERGENIC | None |