Detailed information of SNP:
|
SNP ID:
sf0219999915(Gbrowse)
Chromosome: chr02 Position: 19999915 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 98.62% | 1.38% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 458 | 96.07% | 3.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 299 | 94.65% | 5.35% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0219999915 | G->T | INTERGENIC | None |