Detailed information of SNP:
|
SNP ID:
sf0220010268(Gbrowse)
Chromosome: chr02 Position: 20010268 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1321 | 93.49% | 6.51% |
| All Indica | 775 | 99.74% | 0.26% |
| All Japonica | 434 | 81.11% | 18.89% |
| Aus | 60 | 100.00% | 0.00% |
| Indica I | 360 | 99.44% | 0.56% |
| Indica II | 209 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 100.00% | 0.00% |
| Temperate Japonica | 298 | 73.83% | 26.17% |
| Tropical Japonica | 78 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 93.10% | 6.90% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220010268 | T->C | INTERGENIC | None |