Detailed information of SNP:
|
SNP ID:
sf0220037279(Gbrowse)
Chromosome: chr02 Position: 20037279 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1154 | 96.97% | 3.03% |
| All Indica | 545 | 93.58% | 6.42% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 276 | 93.48% | 6.52% |
| Indica II | 147 | 96.60% | 3.40% |
| Indica Intermediate | 122 | 90.16% | 9.84% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 33 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220037279 | T->C | LOC_Os02g33660(LOC_Os02g33660.1) | Non-Synonymous SNP |