Detailed information of SNP:
|
SNP ID:
sf0220070144(Gbrowse)
Chromosome: chr02 Position: 20070144 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 52.41% | 47.59% |
| All Indica | 793 | 85.37% | 14.63% |
| All Japonica | 496 | 2.62% | 97.38% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 373 | 80.97% | 19.03% |
| Indica II | 211 | 85.78% | 14.22% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220070144 | T->C | INTERGENIC | None |