Detailed information of SNP:
|
SNP ID:
sf0220070364(Gbrowse)
Chromosome: chr02 Position: 20070364 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 52.64% | 47.36% |
| All Indica | 799 | 85.86% | 14.14% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 82.40% | 17.60% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220070364 | A->G | INTERGENIC | None |