Detailed information of SNP:
|
SNP ID:
sf0220092275(Gbrowse)
Chromosome: chr02 Position: 20092275 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 61.61% | 38.39% |
| All Indica | 798 | 88.72% | 11.28% |
| All Japonica | 496 | 18.95% | 81.05% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 85.56% | 14.44% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 24.78% | 75.22% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220092275 | C->T | INTERGENIC | None |